MegaGo: Powerful Approach to Assess Functional Gene Ontology Similarity across Meta-Omics Data Sets (https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00926)
MegaGO is available as a web application at https://megago.ugent.be and is installable via pip as a standalone command line tool and reusable software library. All code is open source under the MIT license and is available at https://github.com/MEGA-GO/.
BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers (https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00904)
The BioContainers Registry provides a fast and convenient way to find and retrieve bioinformatics tool packages and containers.
OpenMS framework for computational mass spectrometry
OpenMS offers an open-source software C++ library (+ python bindings) for MS data analyses. It provides an infrastructure for the rapid development of mass spectrometry related software as well as a rich toolset built on top of it. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS and Linux. (doi:10.1038/nmeth.3959, https://github.com/OpenMS/OpenMS and https://www.openms.de/)